Projects

Design vision for a next-generation 3D emergent physics simulation platform targeting 10M+ particles — mesoscale force models, Particle Mesh gravity, spring …

Component lifetime estimation from k-out-of-n system data — MLE for exponential and Weibull components under multiple observation schemes

Composition of Bernoulli sets — closed-form error rates for set-theoretic operations (complement, union, intersection, difference), monoidal structure, …

The Perfect Hash Filter: an efficient implementation of the positive Bernoulli set and Bernoulli map abstract data types

The Bernoulli Hash Function: Optimal Bernoulli Sets and Bernoulli Maps

GPG signing for static site markdown content

Declarative language for constructing complex networks from structured data

Bernoulli sets: a compositional algebra for random approximate sets with quantifiable false positive/negative error rates

Trapdoor computing: a paradigm for computing with values hidden behind one-way trapdoors. Cipher maps, Bernoulli approximations, and composable encrypted …

Information Recovery under Deterministic Masking in Exponential Series Systems — short communication

A forge for Claude Code plugins — academic research, fiction worldbuilding, publication workflows, and more

Claude Code plugin for deets — personal metadata queries (identity, profiles, cross-platform disambiguation)

Claude Code plugin for academic research paper lifecycle management — thesis refinement, literature surveys, experimental design, editorial review, and …

CLI toolkit for synchronizing external sources to a Hugo static site

Unified publication pipeline: R packages (CRAN/JOSS/JSS), Python packages (PyPI), and books (Amazon KDP)

Masked-cause likelihood models for series systems with arbitrary hazard components in R

Companion research directions for masked series systems likelihood framework

Masked Causes of Failure in Series Systems: A Likelihood Framework

Narro: lightweight CPU text-to-speech

Series system distributions from flexible hazard rate components in R

AI alignment, moral agency, superintelligence, and the futures we might build

Research framework for sequential prediction algorithms, starting with Context Tree Weighting (CTW)

Client-side encrypted content for Hugo static sites with multi-user access control

Password-protect semi-private content on static sites. Ideal for Hugo blogs, GitHub Pages, and static hosting.

Federated deadman switch with TOTP authentication, post-trigger scheduling, and peer-to-peer state sync

R-universe package registry for queelius

Multi-collection curated awesome-lists powered by curalist

Unix-philosophy image manipulation CLI with lazy evaluation, JSON piping, and multi-image composition

A self-describing, TOML-backed personal metadata store. Unix-philosophy CLI for making personal details instantly available to coding agents and scripts.

R package for automatic differentiation and gradient computation.

Multi-collection curated awesome-list manager

Live-reloading TeX editor with PDF viewer in the browser

Functorial framework for secure computation through homomorphic operations on encrypted algebraic structures

Unified terminal graphics library with multiple renderers (braille, quadrants, sextants, ASCII, sixel, kitty)

Generate a conversable persona from personal data: conversations, writings, emails, bookmarks, photos, reading notes

A unified framework for sequential decision-making: from classical search to deep RL. All methods are approximations of expectimax with different representation …

Essays on induction, inference, and the search for useful representations

Posts influenced by SICP—on abstraction, composition, and computation as a medium for expressing ideas

Essays on digital legacy, graceful degradation, and designing systems that outlast their creators

Photo Toolkit - CLI for managing personal photo libraries with AI-powered organization, SHA256 deduplication, and semantic search

Paper: Preventing Ransomware Damages using In-Operation Off-Site Backup to Achieve a 10^-8 False-Negative Miss-Detection Rate (IEEE ICCI 2025)

Mail Toolkit - Personal email archive management with semantic search, relationship mapping, and privacy controls

A CLI-first, plaintext-native toolkit for capturing and organizing ideas, plans, tasks, and notes. Designed for the LLM era.

The Call of Asheron: An epic fantasy novel exploring forced migration, consciousness, and transformation through four protagonists on an alien world where …

Echoes of the Sublime - A philosophical horror novel exploring AI safety, consciousness, and cognitive bandwidth limits (~103k words)

The Policy - A literary SF novel exploring AI alignment, consciousness, and emergence

Symbolic likelihood models in Python. Build, compose, and analyze likelihood functions with automatic differentiation and symbolic manipulation.

A pattern matching and term rewriting library for Python. Define rewrite rules with intuitive DSL syntax and apply them to transform symbolic expressions.

A header-only C++20 library for zero-copy, prefix-free data representations with algebraic types and succinct data structures

Immutable graph library with 56+ algorithms, transformers, selectors, and lazy views.

Variable-length n-gram language models using suffix arrays.

High-performance N-dimensional sparse spatial hashing library for C++20

Instrumental Goals and Latent Codes in RL-Fine-Tuned Language Models A comprehensive theoretical and empirical analysis of mesa-optimization risks, deceptive …

Theoretical analysis of cryptographic perfect hash functions with optimal space complexity

Convert LaTeX documents to HTML using LaTeXML with theme and component support

LLMs as Intelligent Priors: Enhancing Classical Algorithms Through Learned Initialization

A virtual POSIX filesystem with content-addressable DAG structure. Features immutable nodes, Git-style hashing, functional transformations, and an embedded …

Computational Basis Transforms - A header-only C++17 library for transformations between computational domains

Monte Carlo Tree Search for LLM-based reasoning with fluent API and advanced sampling strategies

Seqwise - Sequential Image Analysis with Vision Language Models A simple, cost-free approach to analyzing sequences of images using local Vision Language Models …

The Dot Ecosystem “What started as a single, humble function evolved into a complete, coherent ecosystem for manipulating data structures—a journey in API …

A network-native functional language.

A powerful relational algebra CLI and library for JSONL data manipulation.

Ransomware Detection using LLMs Research project exploring ransomware detection using Large Language Models, with the Active Detective Agent as the primary …

Research compendium: Cognitive MRI of AI Conversations. Conference paper (Complex Networks 2025, Springer) and journal extension (PLOS Complex Systems).

Cognitive MRI of AI Conversations: Network analysis of ChatGPT conversation logs using semantic embeddings to reveal knowledge topology, community structure, …

Logic programming with LLM integration and wake-sleep learning cycles

Convert source code to structured, context-optimized markdown for LLMs with intelligent summarization.

CLI tool for managing ebooks with semantic search, virtual libraries, annotations, and multi-format export. Part of the Long Echo toolkit for personal data …

A streaming data processing system for JSON with lazy evaluation, composable operations, and a fluent API.

Unix-composable fuzzy logic inference with elegant Pythonic API

A powerful symbolic expression toolkit for rule-based term rewriting.

Reverse-Process Synthetic Data Generation: Automatically Generating Training Language Models for Complex Problem Solving Abstract: This paper introduces a …

ZeroIPC - High-Performance Shared Memory IPC Zero-copy data sharing between processes in C++, Python, Go, and C. No serialization, no bindings — parallel native …

How 256 bits pretend to be infinity: A pedagogical exploration of random oracles and computational randomness

Archived. This was an early experiment with Ollama tooling that didn’t pan out. The code is preserved for reference but is no longer maintained or …

A powerful, immutable-by-default tree manipulation library for Python with functional programming patterns, composable transformations, and advanced pattern …

A consistent API for hypothesis testing in R. Provides generic methods for p-values, test statistics, degrees of freedom, and significance testing. Includes LRT …

marp: true #theme: uncover math: mathjax SLUUG Talk: Large Language Models This repository contains the slides and code for the talk: Demystifying Large …

ElasticSearch Query Fine-Tuning Training Data for Large Language Models

Scalable lock based on 2-thread Peterson lock.

When does model simplification matter? Consequence analysis and adaptive model selection for Weibull series systems with masked failure data.

A modern C++ header-only library implementing Disjoint Interval Sets as a complete Boolean algebra. Features elegant API, compile-time intervals, and …

[Archived] R package for Weibull series system estimation from masked failure data. Companion code for master's project (SIUE, 2023). Superseded by …

[Archived] Master's project (SIUE, 2023): MLE for series system reliability with Weibull components under right-censoring and masked failure data. See …

Flexible hazard rate distributions for survival analysis and reliability engineering in R

Likelihood model for series systems with masked component cause of failure and other censoring mechanisms

ChatGPT chat search This was the first python app I developed in quite some time. I wanted to host ChatGPT logs, experiment with heroku, and see how easy it …

Likelihood model framework

R package for maximum likelihood estimation with compositional data.

Seeing how easy it is to convert an old project on Google App Engine to a modern framework with the help of ChatGPT

Like micrograd, but worse.

Pedagogical blog posts on generic programming in C++, inspired by Alex Stepanov

R package: Algebra over distributions (random elements) with automatic simplification to closed forms

[Archived] Masked data tools for R. Superseded by internalized utilities in likelihood.model.series.md and dfr.lik.series.md.

Algebraic maximum likelihood estimators

mdrelax Relaxed Candidate Set Models for Masked Data in Series Systems Overview This R package implements likelihood-based inference for series systems with …

Apertures A minimal Lisp-like language where “holes” (written ?x or ?ns.x) represent unknown values that can be filled later. This enables pausable, …

Time series analysis of a confidentiality measure for an Encrypted search system We derive a confidentiality measure against an adversary deploying a …

Algebraic cipher types

Master's thesis on encrypted search: enabling standard IR on encrypted collections. Published via ProQuest (2014). Part of the oblivious-computing research …

Encrypted Search with Oblivious Bernoulli Types: Information-Theoretic Privacy through Controlled Approximation

Probabilistic framework for quantifying confidentiality of encrypted search systems using bootstrap methods and entropy analysis

Research code and data for the IEEE CloudCom 2016 paper on estimating confidentiality risks in encrypted search systems. The Moving Average Bootstrap (MAB) …

A unified theoretical framework for oblivious function approximation through algebraic structures and Bernoulli models

Closed-form MLE and Fisher information for exponential series systems with masked failure data. Includes theoretical results, proofs, and numerical validation.

Modern C++20 header-only library for algebraic hash function composition with elegant DSL

Space-efficient approximate mappings using perfect hash functions. Supports arbitrary function approximation (X→Y) with configurable storage (8/16/32/64-bit) …

Privacy-preserving set operations using cryptographic trapdoor functions. Minimal Python library implementing Bernoulli types framework with explicit error …

Bernoulli Data Type A general framework for understanding and constructing probabilistic data structures with controlled error rates. This framework can also …